Noncode 2016 An Informative And Valuable Data Source Of Long Non Coding Rnas
An informative and valuable data source of long non-coding RNAs.
Noncode 2016 an informative and valuable data source of long non coding rnas. Xie C, Yuan J, Li H, et al. Long non-coding RNAs (lncRNAs) form a substantial component of the transcriptome and are involved in a wide variety of regulatory mechanisms. A long nuclear-retained non-coding RNA regulates synaptogenesis by modulating gene expression.
The annotation of more than 300 000 human lncRNAs (hg19) was obtained from LNCat (), the most comprehensive annotation resources for human lncRNAs.The lncRNA annotation of mouse (mm10) was downloaded from NONCODE (version 16) and GENCODE (M10) (), while the lncRNA annotations of rhesus (mac3) and fly (dm6) were downloaded from NONCODE (version 16). 130,558 86,935 cow Bos taurus. 10.1093/nar/gkv1252 OpenUrl CrossRef PubMed.
, 44 , D3–D8. An informative and valuable data source of long non-coding RNAs. PMC free article PubMed Google Scholar.
Compared to protein-coding genes, they are often expressed at low levels and are restricted to a narrow range of cell types or developmental stages. An informative and valuable data source of long non-coding RNAs. The source of NONCODE 16 includes the previous ver-.
An informative and valuable data source of long non-coding RNAs. Close Drawer Menu Open Drawer Menu Home. Crossref, Medline, Google Scholar;.
Nucleic Acids Research, 14, 42 (Databaseissue):98-103. An informative and valuable data source of long non-coding RNAs. Nucleic Acids Res 44(D1):D3–D8 CrossRef PubMed Google Scholar.
Zhao Y, Li H, Fang S, Kang Y, Wu W, Hao Y, et al. Nucleic acids research 44 (D1), D3-D8 , 16. Number of lncRNA transcripts.
An informative and valuable data source of long non-coding RNAs. Especially long non-coding RNAs (lncRNAs). NONCODE (current version v5.0) is an integrated knowledge database dedicated to non-coding RNAs (excluding tRNAs and rRNAs).
Nucleic acids research 44 (D1), D3-D8 , 16. In this work, we link the origins and functions of some lncRNAs to retroposition, a process resulting in the creation of intronless copies (retrocopies) of the so-called parental genes. Zhao Y, Li H, Fang S, Kang Y, Wu W, Hao Y, et al.
Zhao Y, Li H, Fang S, Kang Y, Wu W, Hao Y, Li Z, Bu D, Sun N, Zhang MQ et al (16) NONCODE 16:. R Foundation for Statistical Computing;. Indexing microRNA targets on non-coding transcripts.
These lncRNAs are defined as RNA. View Article PubMed/NCBI Google Scholar 24. 36, 37 Compared with protein‐coding genes, lncRNAs are found to constitute a much larger proportion, 38 which may serve as a rich source of potential biomarkers.
Since NONCODE 16 was released two years ago, the amount of novel identified ncRNAs has been enlarged by the reduced cost of next-generation sequencing, which has produced an explosion of newly identified data. An informative and valuable data source of long non-coding RNAs. An informative and valuable data source of long non-coding RNAs.
A web server for functional annotation of long non-coding RNAs, Nucl Acids Res 39:W118–W124, 11. Crossref, Medline, Google Scholar;. An informative and valuable data source of long non-coding RNAs.
The development of high‐throughput sequencing technologies offers the opportunities to explore a wealth of novel, unannotated transcripts, especially long non‐coding transcripts. MEN epsilon/beta nuclear-retained non-coding RNAs are up-regulated upon muscle differentiation and are essential components of. A Language and Environment for Statistical Computing.
NONCODE 16 has also introduced three important new features:. An informative and valuable data source of long non-coding RNAs. Antisense transcription in the mammalian transcriptome.
An informative and valuable data source of long non-coding RNAs journal, November 15 Zhao, Yi;. Nucleic Acids Res 16;44:D3-8. A class of RNA molecules that is identified now as long‐noncoding‐RNAs (lncRNAs).
CAS PubMed Article PubMed Central Google Scholar. Non-coding RNAs (ncRNAs) are a key regulator of gene expression, which can be divided into classes based on their mechanisms of action and genomic origin, including housekeeping ncRNAs and regulatory ncRNAs 1,5.The housekeeping ncRNAs comprise of ribosomal RNAs (rRNAs), transfer RNAs and small nucleolar RNAs (snoRNAs). Zhao Y,Li H,Fang S,Kang Y,Wu W,Hao Y,Li Z,Bu D,Sun N,Zhang MQ,Chen R Nucleic Acids Res 15.
Exploring the world of long non-coding RNA genes. An informative and valuable data source of long non-coding RNAs. There are excellent recent articles documenting these findings.
3, 8, 9 These experiments have shown that in all cases, a class of very abundant, but not originally predicted, RNA molecules is present in the transcriptomes:. Xie C, Yuan J, Li H, Li M, Zhao G, Bu D. As a consequence, the diversity of their isoforms is still far from being recorded and catalogued in its.
Now, there are 17 species in NONCODE (human, mouse, cow, rat, chicken, fruitfly, zebrafish, celegans, yeast). Number of lncRNA genes.;. Zhao Y, Li H, Fang S, Kang Y, Wu W, Hao Y, et al.
Crossref Medline Google Scholar;. The recently reduced cost of RNA sequencing has produced an explosion of newly identified data. We searched PubMed using the key words ‘ncrna’, ‘noncoding’, ‘non-coding’, ‘no code’, ‘non-code’, ‘lncrna’ and ‘lincrna’, and found 6532 new articles since 1 June 13 (the last collection date for NONCODE).
44 , D3 - D8. An informative and valuable data source of long non-coding RNAs. Fang et al., “NONCODE 16:.
View Paper (PubMed) View Publication. Nucleic Acids Research, 15, 44 (D1):D3-D8. Yi Z, Hui L, Fang S, et al.
The estimated number of human lncRNA genes ranges from ~16,000 predicted by GENCODE 6 to ~100,000 predicted by NONCODE 7. Genome-wide characterization of long intergenic non-coding RNAs (lincRNAs) provides new insight into viral diseases in honey bees Apis cerana and Apis mellifera. Y Zhao et al., NONCODE 16:.
Zhao Y, Li H, Fang S, Kang Y, Wu W, Hao Y, Li Z, Bu D, Sun N, Zhang MQ, Chen R, NONCODE 16:. 10.1093/nar/gkv1252 PubMed Abstract | CrossRef Full Text | Google Scholar. Crossref, Medline, Google Scholar.
We searched PubMed using the key words ‘ncrna’, ‘noncoding’, ‘non-coding’, ‘no code’, ‘non-code’, ‘lncrna’ and ‘lincrna’, and found 6532 new articles since 1 June 13 (the last collection date for NONCODE). Ma L, Bajic VB, Zhang Z. An informative and valuable data source of long non-coding RNAs.
An informative and valuable data source of long non-coding RNAs. An informative and valuable data source of long non-coding RNAs,” Nucleic Acids Research, vol. And (iii) an interface to choose high-quality datasets through predicted scores, literature support and long-read sequencing method support.
Long non-coding RNAs (lncRNAs) are a class of intensely studied, yet enigmatic molecules that make up a substantial portion of the human transcriptome. An informative and valuable data source of long non-coding RNAs, Nucl Acids Res 44:D3–8, 16. An informative and valuable data source of long non-coding RNAs.
Q Liao et al., ncFANs:. View Article PubMed/NCBI Google Scholar 19. 10.1093/nar/gkv1252 PubMed Abstract | CrossRef Full Text | Google Scholar.
An informative and valuable data source of long non-coding RNAs. Non-coding RNAs (ncRNAs) are a type of RNA molecule, which are not translated into proteins. In humans, less than 2% of the genome correlates to the coding region, despite a transcription rate as high as even 93% 3,4,5.More recently, the exponential increase in next-generation sequencing and other similar high-throughput methods has made available a plethora of information on ncRNAs.
An informative and valuable data source of long non-coding RNAs Y Zhao, H Li, S Fang, Y Kang, W Wu, Y Hao, Z Li, D Bu, N Sun, MQ Zhang,. Nat Rev Genet 17, 601–614. Long noncoding RNAs (lncRNA), a class of nonprotein-coding RNA molecules, regulate gene imprinting and embryonic development.
CAS Article Google Scholar. An informative and valuable data source of long non-coding RNAs J. “Do circulating long non-coding RNAs (lncRNAs) (LincRNA-p21, GAS 5, HOTAIR) predict the treatment response in patients with head and.
BMC genomics 16 , 680, https://doi. Article PubMed Google Scholar. Additionally, a significant proportion of our noncoding DNA is transcribed into long noncoding RNAs (lncRNAs), a largely unexplored class of noncoding RNAs >0 nucleotides long 5.
Zhao Y, Li H, Fang S, et al. An informative and valuable data source of long non-coding RNAs. Zhao Y., Li H., Fang S.
Using comparative genomics to understand long non-coding RNAs. Similar to the former iterations of NONCODE (18–21), the source of NONCODE 16 includes the previous versions of NONCODE, the collated literature and other public databases. 167,150 101,700 mouse Mus musculus :.
An informative and valuable data source of long non-coding RNAs, Nucleic Acids Res 44(D1) :D3, 16. An informative and valuable data source of long non-coding RNAs. 12 Zhao Y , Li H , Fang S , Kang Y , Wu W , Hao Y , Li Z , Bu D , Sun N , Zhang MQ , Chen R (16) NONCODE 16:.
Zhao Y, Li H, Fang S, Kang Y, Wu W, Hao Y, Li Z, Bu D, Sun N, Zhang MQ, Chen R. (ii) the relationships between lncRNAs and diseases;. Fang, Shuangsang Nucleic Acids Research, Vol.
RNA editing sites in lncRNA transcripts. Ulitsky I (16) Evolution to the rescue:. Zhao Y, Li H, Fang S, Kang Y, Wu W, Hao Y, Li Z, Bu D, Sun N, Zhang MQ, et al:.
Exploring the world of long non-coding RNA genes. Indexing microRNA targets on non-coding transcripts DIANA-LncBase v2:. An informative and valuable data source of long non-coding RNAs.
An informative and valuable data source of long non-coding RNAs NONCODE 16:. Although higher organisms transcribe lots of RNAs, the proteins or polypeptides encoded through this transcript only occupy 2% of the entire genomes. An informative and valuable data source of long non-coding RNAs.
In this review, we discuss the challenges related to long non‐coding RNA expression profiling, highlight how cancer long non‐coding RNAs provide new opportunities for cancer diagnosis and. The NONCODE human lncRNA database annotated 527,336. Similar to the former iterations of NONCODE , the source of NONCODE 16 includes the previous versions of NONCODE, the collated literature and other public databases.
An informative and valuable data source of long non-coding RNAs. The remaining are noncoding RNAs (ncRNAs). Bu D, Yu K, Sun S, Xie C, Skogerbo G, Miao R.
Arteriosclerosis, Thrombosis, and Vascular Biology (ATVB) Journal Home;. An informative and valuable data source of long non-coding RNAs Y Zhao, H Li, S Fang, Y Kang, W Wu, Y Hao, Z Li, D Bu, N Sun, MQ Zhang,. Necsulea A, Soumillon M, Warnefors M, et al.
Zhao Y, Li H, Fang S, Kang Y, wu W, Hao Y, et al.
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